MPICorMat

MPICorMat is a parallel tool to construct correlation similarity matrices as part of the procedure to generate gene co-expression networks. This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of the first module of the RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). RMTGeneNet users can exchange this CCM module by MPICorMat, benefit from its fast computation to generate the similarity
matrix, and then use the similarity matrix as input for the second module (RMM) to
construct the final gene co-expression network.

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux

Intended Audience

Healthcare Industry, Information Technology, Science/Research

User Interface

Command-line, Console/Terminal

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2016-10-03

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