MolBioLib Files

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## MolBioLib: A C++11 framework for rapidly developing bioinformatics tasks ##
## Copyright (C)  2012  Massachusetts General Hospital                      ##
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## This program is free software: you can redistribute it and/or modify     ##
## it under the terms of the GNU General Public License as published by     ##
## the Free Software Foundation, version 3 of the License.                  ## 
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## This program is distributed AS IS.                                       ##
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The GNU license text may be found in the COPYING file.



This is an update to MolBioLib's initial release.  The initial release
stays on SourceForge since it is what is in the Bioinformatics paper.
However, this is a much improved version.  In particular, please note
the inclusion of the singleLaneDisease* Pipeline directory in the Projects
directory.  This pipeline will try to find disease causing variants.  It 
is not the easiest to set up with a myriad of packages, but once set up,
it will take you from fastq files to GATK calls within regions of 
homozygosity, for example.

Some of the keywords have changed some and we now suggest for the
ReadOnly* classes to directly access its tokens variable instead of 
copying to a new tokens variable.