MicroRNA Discovery By Deep Sequencing Icon

MicroRNA Discovery By Deep Sequencing

beta
5.0 Stars (1)
15 Downloads (This Week)
Last Update:
Download mireap_0.2.tar.gz
Browse All Files

Description

MIREAP is a tool which can be used to identify both known and novel microRNAs from small RNA libraries deeply sequenced by Solexa/454/Solid technology.

MicroRNA Discovery By Deep Sequencing Web Site

KEEP ME UPDATED

Other Useful Business Software

Protect your Network & Cloud Assets with USM Anywhere Icon

Discover a better way to detect & respond to threats before they impact your business with AlienVault USM Anywhere.

Protect your Network & Cloud Assets with USM Anywhere Icon
AlienVault® Unified Security Management™ (USM™) is an innovative approach to security monitoring, delivered in a unified platform. The USM platform includes five essential security capabilities that provide resource-constrained organizations with everything they need for effective threat detection, incident response, and compliance management, in a single pane of glass.

User Ratings

★★★★★
★★★★
★★★
★★
1
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
Write a Review

User Reviews

  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    At first I was skeptical that there was very little documentation, and things got worse when my jobs produced an empty results file without any error messages to troubleshoot the issues. Then I took a close look at the supplied test files and tried to match the format completely and then finally got it to work. Generating the "map.txt" file took a while and I don't see why the mireap can't directly use sam files. I must say the results are absolutely worth the effort in generating the "map.txt" file and troubleshooting other issues. The output files show regions of the genome which express microRNA that we can now test with PCR. With more documentation and helpful error messages, this software could be really good.

    Posted 06/13/2013
Read more reviews

Additional Project Details

Languages

English

User Interface

Command-line

Programming Language

Perl

Registered

2008-10-20

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

JavaScript is required for this form.

No, thanks