MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
Features
- Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
- Can use paired-end and / or unpaired data
- Supports ancillary data in TRACEINFO format (from NCBI)
- Marks places of interest with tags so that these can be found quickly in finishing programs
- Has a SNP analysis pipeline for sequencing data of viruses and procaryonts
Categories
Bio-InformaticsLicense
GNU General Public License version 2.0 (GPLv2)Other Useful Business Software
Discover HPCC Systems - the truly open source big data solution that allows you to quickly process, analyze and understand large data sets, even data stored in massive, mixed-schema data lakes. Designed by data scientists, HPCC systems is a complete integrated solution from data ingestion and data processing to data delivery. The free online introductory courses and a robust developer community allow you to get started quickly.
Rate This Project
Login To Rate This Project
User Reviews
-
MIRA is definitely an under-appreciated assembler which peforms well on smaller (viral/bacterial) genomes
-
Mira-assembler works wonderful.
-
it is not only the program which is spectacular, but also its author Mr.Chevreux is from outer space. you must definitely give a try.
-
the best assembler so far