MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.

Features

  • Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
  • Can use paired-end and / or unpaired data
  • Supports ancillary data in TRACEINFO format (from NCBI)
  • Marks places of interest with tags so that these can be found quickly in finishing programs
  • Has a SNP analysis pipeline for sequencing data of viruses and procaryonts

Project Activity

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Categories

Bio-Informatics

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User Reviews

  • MIRA is definitely an under-appreciated assembler which peforms well on smaller (viral/bacterial) genomes

  • Mira-assembler works wonderful.

    1 user found this review helpful.
  • it is not only the program which is spectacular, but also its author Mr.Chevreux is from outer space. you must definitely give a try.

  • the best assembler so far

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Additional Project Details

Intended Audience

Advanced End Users, Science/Research

User Interface

Command-line

Programming Language

C++

Registered

2009-08-06