Download Latest Version metagenetree_v0.1.2.tar.gz (245.3 kB)
Email in envelope

Get an email when there's a new version of MetaGeneTree

Home
Name Modified Size InfoDownloads / Week
releases 2011-05-09
0
README 2011-05-09 3.0 kB
0
Totals: 2 Items   3.0 kB 0 
--------------------------------------------------------------------------------
MetaGeneTree - README
--------------------------------------------------------------------------------

This software computes likelihoods for infinitely-many-sites sequence data
under multiple merger coalescents. The likelihood can be computed exactly
or approximated via importance sampling.

NOTICE:

This software is stil in a developmental stage. It comes with absolutely no
warranty of fitness for a particular purpose. If you encounter bugs, please
contact the developers at http://metagenetree.sourceforge.net .

REQUIREMENTS:

This software is intended to run on any platform. So far it has been tested on
i686. It just requires gcc version 2.95 or higher.

LICENSE:

This software is distributed under the GNU GENERAL PUBLIC LICENSE. You should
have obtained a copy of the license in a file named 'COPYING' together with
this software.

--------------------------------------------------------------------------------
Building:
--------------------------------------------------------------------------------


The archive 'metagenetree_0.1.2.tar.gz' containing the sourcecode can be
obtained at 'http://metagenetree.sourceforge.net/'. Unpack the sourcecode into
a directory of your choice via the command

tar xzf metagenetree_0.1.2.tar.gz

Change into the subdirectory 'metagenetree_0.1.2' and run

./configure
make

to build the program.

The file 'users_guide.tex' can be transcribed with latex to get a short
user's guide. If you have 'doxygen' available, the command

doxygen my_doxyfile

executed in the main directory will generate the class and sourcecode
documentation in the directory 'html'. An archive
'metagenetree_code_documentation_html_v0.1.2.tar.gz' containing the class and
sourcecode documentation can also be found at
'http://metagenetree.sourceforge.net/'.

--------------------------------------------------------------------------------
Running:
--------------------------------------------------------------------------------

After compiling successfully, the executable can be found at
'bin/MetaGeneTree'. Calling it without command line arguments or the argument
'-h' outputs an overview of the possible invocations.

For more information refer to the User's Guide available at
http://metagenetree.sourceforge.net

--------------------------------------------------------------------------------
ChangeLog:
--------------------------------------------------------------------------------

= 0.1.2 =
* Fixed: The description in the users guide of the command line parameter
specifying the proposal distribution was incorrect.

= 0.1.1 =
* Fixed: Estimation of time to most recent common ancestor produced SEGFAULT

= 0.1.0 =
First release of the software.

--------------------------------------------------------------------------------
More info at:
http://metagenetree.sourceforge.net
--------------------------------------------------------------------------------
Source: README, updated 2011-05-09