MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full.

If you are using this pipeline for your work, please cite:
Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999
The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg

Features

  • a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline.
  • It bundles essential annotation tasks such as feature prediction, functional annotation with Hidden Markov Model (HMM) searches as well as blast and diamond searches.
  • It estimates and visualizes quantitative taxonomic and pathway compositions of multiple metagenomic and proteomics samples
  • It provides a HTML interface, bringing all annotation results together in sortable and searchable tables, collapsible trees, and other graphic representations, enabling intuitive navigation of complex data
  • It has a Docker image available

Project Samples

Project Activity

See All Activity >

License

Academic Free License (AFL)

Follow MetaErg

MetaErg Web Site

Other Useful Business Software
Gen AI apps are built with MongoDB Atlas Icon
Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.
Start Free
Rate This Project
Login To Rate This Project

User Ratings

★★★★★
★★★★
★★★
★★
0
1
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 1 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5

User Reviews

  • Using it to annotate metagenomics samples, a good alternative to Prokka, MG-Rast and friends.
Read more reviews >

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Command-line, Web-based

Programming Language

JavaScript, Perl

Database Environment

SQLite

Related Categories

Perl Bio-Informatics Software, Perl Data Labeling Tool, JavaScript Bio-Informatics Software, JavaScript Data Labeling Tool

Registered

2018-06-06