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readme.txt 2014-05-23 1.4 kB
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raw.bin.count.for.360.gDNA.samples.zip 2014-05-23 29.0 MB
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raw.bin.count.for.176.plasma.samples.zip 2014-05-23 14.8 MB
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plasma.truth.table.csv 2014-05-23 3.8 kB
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normalized.bin.count.for.360.gDNA.samples.zip 2014-05-23 32.3 MB
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normalized.bin.count.for.176.plasma.samples.zip 2014-05-23 15.9 MB
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gDNA.truth.table.csv 2014-05-23 23.4 kB
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Totals: 7 Items   92.0 MB 0 
The data and script stored in this repository are companion information for the manuscript entitled "Detection of Fetal Subchromosomal Abnormalities by Sequencing Circulating Cell-Free DNA from Maternal Plasma"
authors: Chen Zhao, John Tynan, Mathias Ehrich, Gregory Hannum, Ron McCullough, Juan-Sebastian Saldivar, Paul Oeth, Dirk van den Boom, Cosmin Deciu*
Corresponding author – cdeciu@sequenom.com

Datafiles included in this package are:

gDNA.truth.table.csv
The truth table for the 360 gDNA mixtures. SeqResult.ID is the ID for each sample, Array.Karyotype.result is the karyotype determined by microarray (served as groud truth), and Input.Fraction is the planned titration levels for the given sample (e.g. 0.2 = 20% titration).

plasma.truth.table.csv
The truth table for the 176 plasma samples.

normalized.bin.count.for.176.plasma.samples.csv
The normalized 50kb bin count for the 176 plasma samples. The columns are the different samples and the rows are the different bins. The first column contains the bin names

normalized.bin.count.for.360.gDNA.samples.csv
The normalized 50kb bin count for the 360 gDNA mixtures. Same format as above.

raw.bin.count.for.176.plasma.samples.csv
The raw bin count for the 176 plasma samples. Same format as above.

raw.bin.count.for.360.gDNA.samples.csv
The raw bin count for the 360 gDNA mixtures. Same format as above.
Source: readme.txt, updated 2014-05-23