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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| readme.txt | 2017-03-08 | 2.1 kB | |
| string_action_symbols_400.txt | 2017-03-03 | 27.4 MB | |
| types_rna.txt | 2017-03-03 | 4.4 kB | |
| string_prolif_up.Rdata | 2017-03-03 | 22.2 kB | |
| string_mesen_up.Rdata | 2017-03-03 | 14.1 kB | |
| string_immuno_up.Rdata | 2017-03-03 | 5.8 kB | |
| string_differ_up.Rdata | 2017-03-03 | 4.4 kB | |
| sample_list.txt | 2017-03-03 | 2.2 kB | |
| R_CODE_Ovarian_02.R | 2017-03-03 | 21.5 kB | |
| QC_string_phy.Rdata | 2017-03-03 | 560.0 kB | |
| R_CODE_Ovarian_01.R | 2017-03-03 | 14.6 kB | |
| normalized_set_ovarian.txt | 2017-03-03 | 4.9 MB | |
| log_gap.txt | 2017-03-03 | 400.2 kB | |
| list_mesen_up.txt | 2017-03-03 | 3.0 kB | |
| list_prolif_up.txt | 2017-03-03 | 3.4 kB | |
| DGI_v301.txt | 2017-03-03 | 1.7 MB | |
| list_immuno_up.txt | 2017-03-03 | 1.7 kB | |
| list_differ_up.txt | 2017-03-03 | 1.8 kB | |
| Int_Direct_clusters.csv | 2017-03-03 | 56.6 kB | |
| Totals: 19 Items | 35.1 MB | 0 | |
R_CODE_Ovarian_01.R : R code. The script for the procedure from data-handling to Protein-Protein Interaction (PPI) Network building R_CODE_Ovarian_02.R : R code. The script for the plotting step DGI_v301.txt : The information of druggable genes and drugs provided by the Drug Gene Interaction Database (DGIdb, Griffith M et al. 2013) Int_Direct_clusters.csv :The PPI direction information of each cluster list_differ_up.txt : The list of up-regulated genes in the differentiated subtype of ovarian cancer. The genes have p-values for one-sided t-test less than 0.01. list_immuno_up.txt : The list of up-regulated genes in the immunoreactive subtype of ovarian cancer. The genes have p-values for one-sided t-test less than 0.01. list_mesen_up.txt : The list of up-regulated genes in the mesenchymal subtype of ovarian cancer. The genes have p-values for one-sided t-test less than 0.01. list_prolif_up.txt : The list of up-regulated genes in the proliferative subtype of ovarian cancer. The genes have p-values for one-sided t-test less than 0.01. log_gap.txt : The table of p-values and mean differences resulting from one-sided t-test normalized_set_ovarian.txt : The analysis dataset from Supplementary Table 2 (tab 'VariableOvarianProteomeData') of Zhang H et al.2016. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer QC_string_phy.Rdata : The PPI information matrix of STRING. The elements are physical interaction scores sample_list.txt : The sample list in the analysis set string_action_symbols_400.txt : The types of human PPI. The data from http://string-db.org/newstring_download/protein.actions.v10/9606.protein.actions.v10.txt.gz were used. Protein ids (ENSP) of the data were changed to gene symbols string_differ_up.Rdata : The PPI types of the differentiated subtype of ovarian cancer string_immuno_up.Rdata : The PPI types of the immunoreactive subtype of ovarian cancer string_mesen_up.Rdata : The PPI types of the mesenchymal subtype of ovarian cancer string_prolif_up.Rdata : The PPI types of the proliferative subtype of ovarian cancer types_rna.txt : The subtype annotations of samples