Name | Modified | Size | Downloads / Week |
---|---|---|---|
Parent folder | |||
README.txt | 2021-06-19 | 1.8 kB | |
Maize.zip | 2021-06-19 | 35.8 MB | |
Ecoli.zip | 2020-12-07 | 3.1 MB | |
Tomato.zip | 2020-12-07 | 11.8 MB | |
Yeast.zip | 2020-12-07 | 6.0 MB | |
Synechocystis.zip | 2020-12-07 | 1.4 MB | |
Rat.zip | 2020-12-07 | 23.5 MB | |
Mouse.zip | 2020-12-07 | 43.4 MB | |
Arabidopsis.zip | 2020-12-07 | 22.4 MB | |
Human.zip | 2020-12-07 | 52.5 MB | |
Totals: 10 Items | 199.7 MB | 0 |
-> MANTI.pl - MQ Advanced N-Termini Interpreter . pl targetP2 predictions README Here you can download TargetP2.0 [1] predictions which can be used for proteolytic processing annotation with MANTI.pl; choose your prediction file and unzip the corresponding file into a folder of your choice. These annotations are used for the assignment of putative signal-/transit-peptide cleavages which are currently not yet annotated in the UniProt reference proteomes as of the 2020-11-22 (2021-06-18 for Maize). Integration into MANTI.pl is performed via the --join-targetP switch where you need to supply the exact, unpacked (non-ZIP'd) TargetP2.0 prediction file location. The data was downloaded via the website http://www.cbs.dtu.dk/services/TargetP/data.php on 2020-11-30 and assembled with a standalone, local TargetP2.0 installation in the case of the rat predictions. For the rat TargetP2.0 predictions the rat UniProt [2] reference proteome was downloaded from https://www.uniprot.org/proteomes/ on 2020-11-22 including isoforms and processed with the non-plant switch of TargetP2.0. The prediction file is available from here as a reference for the supplied MANTI Tutorial and the community. A latest update for Maize is available as of 2021-06-19 and also supplied for the community. References: - 1: José Juan Almagro Armenteros, Marco Salvatore, Ole Winther, Olof Emanuelsson, Gunnar von Heijne, Arne Elofsson, and Henrik Nielsen Detecting Sequence Signals in Targeting Peptides Using Deep Learning Life Science Alliance 2 (5), e201900429. doi:10.26508/lsa.201900429 - 2: The UniProt Consortium UniProt: a worldwide hub of protein knowledge Nucleic Acids Res. 47: D506-515 (2019) - URL: https://academic.oup.com/nar/article/47/D1/D506/5160987