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This folder contains supplementary material for BiPACE 2D. BiPACE2D-evaluation-src.zip: An archive containing all source code and raw (peak) data sets required to reproduce the evaluation as described in the manuscript. The source code, with the exception of the mSPA and SWPA source codes, is licensed under the L-GPL v3 Open Source license (see http://www.gnu.org/licenses/lgpl-3.0). The sourcecode for the evaluation is now available at GitHub: https://github.com/nilshoffmann/maltcms-evaluation The licensing now allows alternative licensing under the terms of the Eclipse Public License v1. BiPACE2D-SupplementaryFile-2.zip: The supplementary file 2 mentioned in the main manuscript containing alignment references and associated information and data, as well as detailed evaluationa results and plots for all datasets.