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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| maccu.tar.gz | 2023-07-16 | 27.4 MB | |
| maccuWrapper.tar.gz | 2023-07-16 | 60.1 kB | |
| README.txt | 2023-07-14 | 1.8 kB | |
| Totals: 3 Items | 27.4 MB | 0 | |
MACCU (Multi-Array Correlation Computation Utility) See http://maccu.sourceforge.net/index.html for documents. Change logs 0.80 Added: script OneStopWrapper.pl that generates FishingClusteringAuto.pl and GraphAdjustAuto.pl and automatically executes them. This enables easy use of the programs. Added: saving to XGMML files by GraphMakeUp so that output graphs can be easily imported into Cytoscape. Fixed: a number of fixes that cop user input habits. 0.70 Added: script FishingClusteringAuto.pl for batch fishing/clustering. Edit before use. Added: script GraphAdjustAuto.pl for batch GraphAdjust (graph-level operation). Edit before use. Upgrade: multi-configuration of maccu.RelationComputer and maccu.CoExpressFishing, which enables doing multiple clustering/fishing jobs in one execution of the program, saves time of loading expression data. Upgrade: class graph.Graph was created for Graph objects. Upgrade: memory-saving expression file readers for fishing/clustering. Added: -edge option of maccu.GraphMakeUp, set it true for showing edge weights (correlation coefficients). Added: -ND option of maccu.GraphAdjust for graph union. 0.60a Fixed: a minor correction for accession look-up problem of capitalization. 0.60 Added: maccu.Edge2Graph for translating tab-delimited files of relationships (edges) into .graph files. Added: -G option of maccu.GraphAdjust for controlling generation of sub-clusters, defaultly FALSE. Added: -ND option of maccu.GraphAdjust for node-decomposition, useful for comparing networks made based on array data with networks made based on PPI data. Fixed: a number of accession look-up problem of capitalization. 0.56 Added: This release note. Fixed: Some minor typo for description of -I options of some programs.