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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README.txt | 2014-12-16 | 1.6 kB | |
| maccu.tar.gz | 2014-12-16 | 11.2 MB | |
| Totals: 2 Items | 11.2 MB | 0 | |
MACCU (Multi-Array Correlation Computation Utility) See http://maccu.sourceforge.net/index.html for documents. Change logs 0.70 Added: script FishingClusteringAuto.pl for batch fishing/clustering. Edit before use. Added: script GraphAdjustAuto.pl for batch GraphAdjust (graph-level operation). Edit before use. Upgrade: multi-configuration of maccu.RelationComputer and maccu.CoExpressFishing, which enables doing multiple clustering/fishing jobs in one execution of the program, saves time of loading expression data. Upgrade: class graph.Graph was created for Graph objects. Upgrade: memory-saving expression file readers for fishing/clustering. Added: -foldList option of maccu.GraphMakeUp, for multiple fold-change values in XGMML/GraphML outputs. Added: XGMML/GraphML output option of maccu.GraphMakeUp, for Cytoscape import. Added: -edge option of maccu.GraphMakeUp, set it true for showing edge weights (correlation coefficients). Added: -union option of maccu.GraphAdjust for graph union. 0.60a Fixed: a minor correction for accession look-up problem of capitalization. 0.60 Added: maccu.Edge2Graph for translating tab-delimited files of relationships (edges) into .graph files. Added: -G option of maccu.GraphAdjust for controlling generation of sub-clusters, defaultly FALSE. Added: -ND option of maccu.GraphAdjust for node-decomposition, useful for comparing networks made based on array data with networks made based on PPI data. Fixed: a number of accession look-up problem of capitalization. 0.56 Added: This release note. Fixed: Some minor typo for description of -I options of some programs.