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lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis.
More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
Features
- Long read
- RNA-seq
- Alternative splicing
- Pacific Biosciences
- Oxford Nanopore Technologies
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Categories
Bio-InformaticsLicense
GNU General Public License version 3.0 (GPLv3)Follow lr2rmats
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