lr2rmats

lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis.
More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/

Features

Long read
RNA-seq
Alternative splicing
Pacific Biosciences
Oxford Nanopore Technologies

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License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C, Python, Unix Shell

Related Categories

Unix Shell Bio-Informatics Software, Python Bio-Informatics Software, C Bio-Informatics Software

Registered

2018-02-10

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