Lep-Anchor Files

Linkage map guided genome anchoring

Brought to you by: lep-map

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
binary+code.zip	2025-04-15	530.7 kB	0
commands_comparison_table1_small.zip	2019-11-15	5.2 kB	0
simulated_data.zip	2019-11-15	2.0 MB	1
commands_comparison_table1_paf.zip	2019-09-30	621.5 MB	0
commands_comparison_table1_chain.zip	2019-09-30	378.5 MB	0
commands_comparison_table1.zip	2019-09-30	178.9 MB	0
README.txt	2019-09-10	164 Bytes	1
Totals: 7 Items		1.2 GB	2

Lep-Anchor 

usage:
java -cp bin/ CleanMap
java -cp bin/ PlaceAndOrientContigs

compiling:
javac src/*.java -d bin/


(c) 2019, Pasi Rastas, University of Helsinki

Source: README.txt, updated 2019-09-10

Other Useful Business Software

Gen AI apps are built with MongoDB Atlas

Build gen AI apps with an all-in-one modern database: MongoDB Atlas

MongoDB Atlas provides built-in vector search and a flexible document model so developers can build, scale, and run gen AI apps without stitching together multiple databases. From LLM integration to semantic search, Atlas simplifies your AI architecture—and it’s free to get started.

Start Free

Build Securely on Azure with Proven Frameworks

Lay a foundation for success with Tested Reference Architectures developed by Fortinet’s experts. Learn more in this white paper.

Moving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.

Download Now

Recommended Projects

Lep-MAP3
Lep-MAP3 is a novel and free software for linkage mapping. It can construct linkage maps on very large number of markers and individuals on single or multiple families. Especially, it supports whole genome sequencing data even with low sequencing depth. If you use Lep-MAP3, please cite P....
Lep-MAP2
Note: Lep-MAP3 is now available https://sourceforge.net/projects/lep-map3/. Expect 20x-1000x speedup over LM2 and more accurate maps. Lep-MAP2 is a novel linkage map construction software suite. Please refer to the wiki for its documentation. For further information, please contact Pasi...
kSNP
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as...
PhageTerm
NEW VERSION (PhageTermVirome) AVAILABLE AT : (To access the lightest version) https://gitlab.pasteur.fr/vlegrand/ptv/-/releases This new version is now compatible with PYTHON3 and now allows the analysis of multiple phage genomes/contigs (multifasta) in a single analysis. However,...
HaploPainter
HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.

Lep-Anchor Files

Linkage map guided genome anchoring

Get an email when there's a new version of Lep-Anchor