IsoQuant Files

Transcript discovery and quantification with long RNA reads

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Name	Modified	Size	InfoDownloads / Week
Parent folder
IsoQuant-3.12.0.tar.gz	2026-03-13	2.7 MB	0
IsoQuant 3.12.0 source code.tar.gz	2026-03-13	6.4 MB	0
IsoQuant 3.12.0 source code.zip	2026-03-13	6.5 MB	0
README.md	2026-03-13	465 Bytes	0
Totals: 4 Items		15.5 MB	0

TSV output files do not have a # in headers for easier downstream processing (thanks to @yinshiyi).
Fix Python 3.14 compatibility.
Add --barcoded_bam flag for reading barcodes and UMIs directly from a input BAM.
Add --barcode2barcode option for Visium HD data processing.
Dramatic speed-up for 10x and universal barcode calling on large whitelists.
Per-barcode counts grouping is now performed automatically if the barcodes are set.

Source: README.md, updated 2026-03-13

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