iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS)
peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).

iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers.

For more details about iPiG and it's functionallity, please see

"iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations"
Mathias Kuhring and Bernhard Y. Renard
(http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050246)

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Categories

Bio-Informatics

License

BSD License

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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal, Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2012-03-13