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| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| README | 2013-07-18 | 3.3 kB | |
| ibrain2-components-1_0_2.zip | 2013-07-18 | 59.5 MB | |
| Totals: 2 Items | 59.5 MB | 0 | |
Release Notes for version 1.0.2 =================================== New features ------------ * IBTWO-350: Workflow deletion: Implementation of a "deleted" status in the state db. * IBTWO-433 and IBTWO-572: New, unified REST interface making the main functionalities of the system available to application developers. * IBTWO-474: Old processes can be marked as deleted through a REST call. Deleted processes can be filtered out in the web UI, but their data remains in the database for statistical reasons. * IBTWO-484: New module type that executes locally on the IBRAIN2-server (not the cluster), but stages its results to the cluster file system. * IBTWO-485: REST Interface security with http basic authentication. * IBTWO-543 and IBTWO-571: Support for HDF5 containers. * IBTWO-569: Creation of new “workflow.xml” element “hosts”. * IBTWO-570: New staging queue for separate rsync operations (size configurable in “system.config” file). * IBTWO-573: Extended workflow language: new element "input_datasets": input datasets can be named to be addressed as variables by modules, and they can be optionally staged to the processing scratch space. * IBTWO-575: Following a daemon restart, recover only running processes (no error ones). * IBTWO-585: Add compression to log files (gzip) (keep rolling policy). * IBTWO-596 Update iBRAIN2 openBIS API to version 13.04.2. Improvements ------------ * IBTWO-69: Registration of more than one workflow as assay default workflow (only through insert statement in the DB). * IBTWO-196: Controlled Shutdown: REST interface call allows pausing all running processes prior to planned shutdown. * IBTWO-245: Script parameters in workflows are by default passed in double-quotes. * IBTWO-265: More robustness for dataset storage. * IBTWO-267: REST calls to safely pause/resume running processes in iBRAIN2. * IBTWO-469: Support for atomic storage in OpenBIS. * IBTWO-494: Improved speed for dataset listing in Web interface. * IBTWO-577: Staging queue gives priority to fetching from the cluster, over staging to the cluster. * IBTWO-586 Make logging of FileHandlingUtils less verbose (change logging level to WARN). Bug fixes --------- * IBTWO-497: Fix external dataset registration in ibrain2: fails to recover assay_unknown. * IBTWO-504: Renaming a duplicate plate through REST terminates daemon. * IBTWO-507: Fix statistics graphics after Google Charts API update. * IBTWO-512: Implement exponential backoff to make abstract module more robust against network outage during cluster job submission. * IBTWO-518: Faulty process runtime display for processes where stdout/stderr content has been purged from the database. * IBTWO-576: iBRAIN2 process stays in INPUTS_STAGING_RUNNING state because of OpenBIS time out. * IBTWO-580: Fix cluster scratch directory not getting renamed to mark for error in case an error of type INPUTS_STAGING_ERROR is produced. * IBTWO-581: The ibrain DB users have now permissions on tables "ib2_dataset_properties" and "ib2_unregistered_dataset_properties". * IBTWO-560: iBRAIN2 plain installation should bring only the dataset type UNKNOWN. * IBTWO-588 Add new system configuration property "storage.hdf5.ext", which is a regex expression to specify HDF5 extensions.