Name | Modified | Size | Downloads / Week |
---|---|---|---|
src | 2018-04-24 | ||
docs | 2018-01-03 | ||
bin | 2017-12-30 | ||
readme.txt | 2018-04-24 | 2.5 kB | |
Totals: 4 Items | 2.5 kB | 0 |
HTDP High-Throughput Tabular Data Processor Repository structure: bin – binary files (for automatic [windows] and manual [] installation) src – source code (the software is developed using NetBeans IDE [https://netbeans.org/] so whole NetBeans project directory tree was compressed and deposited) docs – user manual and other documentation (example data files were deposited in publicly available repository: https://osf.io/pw2dx/) Install: Depending on your operating system use: htdpinstaller.exe - Windows installer htdp.tgz - tar archive for manual installation (Linux and other java supported operationg systems) Both files may be downloaded from bin directory. System requirements: Windows XP, Windows 7 or Linux with Java run time environment v. 1.6 or later (64-bit version)*. At least 1 GB of RAM, depending on the amount of input data and complexity of queries. *Default Java version is 32-bit and its maximum theoretical heap limit is 4GB. To increase the amount of allocated memory and therefore the performance of this program, the 64-bit version should be used. Windows (automated installation): Run the installation program (htdpinstaller.exe) and follow the on screen tips. The installation program will create program group “HIGH-THROUGHPUT TABULAR DATA PROCESSOR” in Windows Start Menu. The program group contains the shortcut to the “HIGH-THROUGHPUT TABULAR DATA PROCESSOR” as well as to the uninstall program. Additional shortcut to the “HIGH-THROUGHPUT TABULAR DATA PROCESSOR” will be created on Windows desktop. Windows (manual installation): Copy HTDP.jar file and lib folder from the installation archive to selected folder on local hard drive. Run the program using the following command: java -Xmx800M -jar "/path/to/the/program/folder/HTDPjar Linux: Copy HTDP.jar file from the installation archive to selected folder on local hard drive. Run the program using the following command: java -Xmx800M -jar "/path/to/the/program/folder/HTDP.jar Troubleshooting When software does not start check java installation, try runing without memory reservation - use: java -jar /path/to/the/program/folder/HTDP.jar instead of java -Xmx800M -jar /path/to/the/program/folder/HTDP.jar Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858