GSP program are based on Bayesian framework with an EM algorithm to predict genome size iteratively, which is elegant in mathematics. The model first develop under the no sequencing error model, then extend to the sequencing errors containing model.

Features

  • fast calculate the K-mer frequency of the genome size
  • the EM iterative algorithm for the genome size predition
  • extra error model for real data

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  • rename the GSP project to the smartGS

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Registered

2009-12-13