Download Latest Version
jcommon-1.0.18.jar (310.0 kB)
Get an email when there's a new version of GSA-SNP
| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| Parent folder | |||
| lib | 2013-07-19 | ||
| db38_0.txt.gz | 2015-03-22 | 38.3 MB | |
| db19_exon.txt.gz | 2013-07-19 | 16.0 MB | |
| db19_20000.txt.gz | 2013-07-19 | 250.0 MB | |
| db19_10000.txt.gz | 2013-07-19 | 205.9 MB | |
| db19_0.txt.gz | 2013-07-19 | 153.4 MB | |
| GSA-SNP.jar | 2013-07-19 | 281.5 kB | |
| README.txt | 2013-01-17 | 2.1 kB | |
| refGene.txt.gz | 2012-06-06 | 4.2 MB | |
| db18_0.txt.gz | 2012-06-02 | 35.1 MB | |
| db18_10000.txt.gz | 2012-06-02 | 47.1 MB | |
| db18_20000.txt.gz | 2012-06-02 | 56.4 MB | |
| Gene Ontology | 2012-06-02 | 8.3 MB | |
| db18_exon.txt.gz | 2012-06-02 | 2.6 MB | |
| KEGG | 2011-08-29 | 98.9 kB | |
| manual.doc | 2011-08-29 | 1.5 MB | |
| gpl-2.0.txt | 2011-08-28 | 18.1 kB | |
| run.bat | 2011-07-02 | 32 Bytes | |
| run.sh | 2011-07-02 | 32 Bytes | |
| Totals: 19 Items | 819.3 MB | 0 | |
GSA-SNP: Update Log
2013/01/17
- Bug fix: cannot read non-gzipped db file(s)
2012/10/07
- Bug fix: strictly meet the contract of Java7 comparsion in sorting
2012/08/10
- Bug fix: ignore http URLs in .gmt gene set format
- Guarantee corrected p-values monotically increasing
2012/07/12
- Bug fix: unexpectedly stop where rs number does not have corresponding p-values in the SNP data format
- truncate a corrected p-value if it exceeds 1.0
2012/06/07
- Add db18_exon.txt.gz DB (SNP - gene mapping). Users can create their own mapping file that only contains exon regions
- Support GSEA Enrichment Score
- Support permutation output of PLINK
- Take care of gene clusters of the same SNP
2012/03/26
- Bug fix: fall into infinite loop for some rs number patterns
2012/03/19
- New FDR for z-score method. For each gene set with z-score s, it is # {gene set: zscore < -s} / # {gene set: zscore > s}
2012/02/08
- Added another tolerance feature. Replace the values of genes with 1~k-th minimum and maximum p-value in each gene set with those of the k+1-th genes and re-calculate p-values. Still significant genes will be displayed.
2011/09/21
- Fixed wrong x axis labels of the box plot.
2011/08/28
- Users may exclude specific genes from the analysis.
- The result is provided in HTML format which includes the distribution of p-values as box plots.
- Added tolerance feature. Remove genes with minimum and maximum p-value from each gene set and re-calculate p-values. Still significant genes are displayed.
2011/07/02
- Provide command-line user interface
- Added KEGG gene set
2011/04/03
- Provide a tool which makes a mapping from SNP rs number to gene symbol as a file.
The file is used in the SNP analysis.
2011/01/19
- Print p-values of genes as a separate file.
2010/07/19
- In SNP analysis, print SNP-gene symbol mapping table as a file.
2010/06/10
- Use Gene Ontology data processed by outselves instead of GSEA MSigDB.
- Provide the processing tool. Users may update the data whenever they want to.
2010/02/06
- The first release
