gogadget is an R package, and can help with the visualization and interpretation of GO enrichment analysis of RNA-seq data. It is developed especially for the use in combination with goseq.

The functions that are available in this package are extensively described in the user's guide.

To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line:

install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source")

The package was made in R 3.4.2 on a Windows 7 computer, and is also tested on Ubuntu.

Please cite the following paper if you publish results obtained using gogadget:

Nota, B. (2017), Gogadget: an R Package for Interpretation and Visualization of GO Enrichment Results. Mol. Inf. May;36(5-6). doi: 10.1002/minf.201600132.

Project Samples

Heatmap of GO terms Heatmap with overlap index

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Windows

Intended Audience

Science/Research

Programming Language

S/R

Related Categories

S/R Bio-Informatics Software

Registered

2016-08-10
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