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GeneNetWeaver

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Description

GeneNetWeaver (GNW) is an open-source tool for in silico benchmark generation and performance profiling of network inference methods. GNW was used to generate the community-wide DREAM3, DREAM4 and DREAM5 In Silico Challenges.

GeneNetWeaver Web Site

Categories

Bio-Informatics

License

MIT License

Features

  • Extraction of modules from known transcriptional regulatory networks (E.coli, Yeast, etc.)
  • Generation of realistic in-silico gene network benchmarks for network inference methods
  • Simulation of realistic biological experiments (knowckout, knockdown, dual-knockout, multifactorial perturbations, time series, etc.)
  • Performance evaluation of network predictions (Precision-Recall, ROC, motif analysis)

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Additional Project Details

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Registered

2008-07-25

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