Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code.

GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer.

GNomEx is a web application with a Flash client user interface and a Java backend that runs on Apache Tomcat. MySQL is used for the database, although any modern RDBMS can be used.


  • Configurable for many different sequencing and experiment platforms
  • Support for multiple core facilities
  • Automated billing/customer notifications
  • Configurable annotations for experiments, samples, or analyses
  • Built in ABI file viewer

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User Reviews

  • Excellent! Easy to use.

  • Very good Software.

    2 users found this review helpful.
  • Thanks for Gnomex, it's excellent!

    1 user found this review helpful.
  • very good project, thanks!

    1 user found this review helpful.
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Additional Project Details

Intended Audience


User Interface


Programming Language

Java, Flex

Database Environment