GMOL Icon

GMOL

A tool for 3D genome structure visualization

Add a Review
5 Downloads (This Week)
Last Update:
Download gmol_1.1.jar
Browse All Files
Windows Mac Linux

Screenshots

Description

GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group.

The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project is supported by the National Science Foundation (grant no. DBI1149224).

GMOL Web Site

Features

  • Interactively visualize genome structures in 3D
  • Supports multiple scales/resolutions: global, chromosome, loci, fiber, nucleosome, nucleotide
  • Measure distances and angles between points in the structure
  • Rotate and scale models to analyze them even more
  • Select parts of the structure based on index, scale, or sequence information
  • Get DNA sequence for selected structures or portions of structures
  • Includes existing Jmol functions

KEEP ME UPDATED

Other Useful Business Software

Start Coding to S3 Storage from Your Laptop Icon

Standalone S3 Server can be used for development, testing and live deployments.

Start Coding to S3 Storage from Your Laptop Icon
Object storage is clearly the simplest, most flexible, and most scalable way to store tons of unstructured content. The Scality S3 Server enables developers and businesses to take advantage of this simplicity, for free. Whether you’re programming in Go or Java, or whether you’re using existing applications for personal or shared data management, the Scality S3 Server is a great starting point.
Write a Review

User Reviews

Be the first to post a review of GMOL!

Additional Project Details

Intended Audience

Science/Research, Engineering

Programming Language

Java

Registered

2014-02-14

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

JavaScript is required for this form.

No, thanks