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apollo-1.11.0.tgz 2009-06-04 26.7 MB
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apollo.1.9.3.tar.gz 2008-07-02 34.0 MB
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apollo.1.9.0.tar.gz 2008-05-12 34.0 MB
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apollo.1.8.0.tar.gz 2008-04-07 33.1 MB
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apollo.1.7.1.tar.gz 2008-01-15 31.2 MB
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apollo.1.7.0.tar.gz 2008-01-15 31.0 MB
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gmod-0.5-RC1-no-apollo-db.tar.gz 2007-01-06 3.6 MB
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Generic-Genome-Browser-1.66-RC3.tar.gz 2006-11-29 2.2 MB
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Generic-Genome-Browser-1.66-RC2.tar.gz 2006-11-09 2.2 MB
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Generic-Genome-Browser-1.66-RC1.tar.bz2 2006-10-18 1.4 MB
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Generic-Genome-Browser-1.65-rc2.tar.bz2 2006-07-18 1.6 MB
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apollo.1.6.5.tar.gz 2006-07-05 20.5 MB
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apollo.1.6.4.tar.gz 2006-01-05 14.4 MB
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Generic-Genome-Browser-1.64-rc1.tar.bz2 2005-11-16 1.4 MB
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apollo.1.6.0.tar.gz 2005-11-03 14.5 MB
1 1 weekly downloads
FlashGViewer-0.2.tar 2005-11-02 931.8 kB
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apollo.1.5.4.tar.gz 2005-08-22 16.2 MB
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bioperl-1.5_for_gmod.tar.bz2 2005-07-15 5.3 MB
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Class-DBI-Pg-0.06-multiple-schemata.patch 2005-07-13 2.8 kB
1 1 weekly downloads
gmod-0.003.tar.gz 2005-07-08 2.9 MB
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apollo.1.5.2.tar.gz 2005-07-07 13.9 MB
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apollo.1.5.1.tar.gz 2005-06-21 20.9 MB
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apollo.1.5.0.tar.gz 2005-03-18 25.5 MB
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apollo.1.4.6.tar.gz 2004-11-17 25.1 MB
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pubfetch-0.01.tar.gz 2004-09-16 6.5 MB
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pubfetch-0.01-src.tar.gz 2004-09-16 7.5 MB
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citrina-0.5-parsers.tar.gz 2004-07-23 6.0 kB
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apollo.1.4.5.tar.gz 2004-07-02 13.5 MB
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so.tar.bz2 2004-06-30 33.2 kB
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gds-0.1.tar.gz 2004-05-14 4.2 MB
2 2 weekly downloads
apollo.1.4.4.tar.gz 2004-04-23 12.2 MB
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apollo.1.4.3.tar.gz 2004-04-19 11.9 MB
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gmod-0.002.tar.gz 2004-03-29 5.7 MB
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apollo.1.4.2.tar.gz 2004-03-22 12.0 MB
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Generic-Genome-Browser-1.60.tar.gz 2004-03-17 1.4 MB
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Generic-Genome-Browser-1.59.tar.gz 2004-03-16 1.4 MB
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gmod-0.001.tar.gz 2004-01-07 5.2 MB
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apollo.1.3.6.tar.gz 2003-11-04 10.6 MB
1 1 weekly downloads
apollo.1.3.5.tar.gz 2003-08-08 10.1 MB
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apollo.1.3.4.tar.gz 2003-06-17 10.0 MB
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apollo.1.3.2.tar.gz 2003-05-19 10.8 MB
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apollo.1.3.1.tar.gz 2003-05-05 10.8 MB
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GO_modules.tar.gz 2003-03-10 35.1 kB
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apollo.1.2.6.tar.gz 2003-03-10 11.3 MB
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apollo-with-src.1.2.5.tar.gz 2003-02-28 11.3 MB
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atidb_sampleData.tar.gz 2003-02-25 316.4 MB
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atidb_software.tar.gz 2003-02-25 629.7 kB
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Generic-Genome-Browser-1.49.tar.gz 2003-02-13 497.6 kB
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Generic-Genome-Browser-1.48.tar.gz 2003-02-09 623.9 kB
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apollo.1.2.3.zip 2002-12-19 9.6 MB
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apollo-with-src.1.2.3.tar.gz 2002-12-19 11.3 MB
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chado_ag.gz 2002-12-19 99.3 MB
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apollo.1.2.2.zip 2002-12-06 7.4 MB
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apollo-with-src.1.2.2.tar.gz 2002-12-06 9.0 MB
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chado_pf.gz 2002-11-04 15.3 MB
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chado_pf.ddl 2002-11-04 24.8 kB
1 1 weekly downloads
gmod_readme 2002-11-04 1.4 kB
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apollo.1.1.11.zip 2002-10-30 9.5 MB
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apollo-with-src.1.1.11.tar.gz 2002-10-30 11.1 MB
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gramene-dump.sql.gz 2002-10-11 1.1 MB
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apollo-with-src.1.1.9.tar.gz 2002-09-26 10.2 MB
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apollo.1.1.9.zip 2002-09-26 8.7 MB
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apollo-with-src.1.1.8.tar.gz 2002-09-09 9.6 MB
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apollo.1.1.8.tar.gz 2002-09-04 9.6 MB
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apollo.1.1.8.zip 2002-09-04 8.6 MB
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apollo.1.1.7.zip 2002-07-29 7.5 MB
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apollo-with-src.1.1.7.tar.gz 2002-07-29 8.0 MB
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README-BioGraphics 2002-07-07 132 Bytes
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apollo.1.1.6.zip 2002-07-01 7.0 MB
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apollo-with-src.1.1.6.tar.gz 2002-07-01 7.5 MB
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apollo-with-src.1.1.5.tar.gz 2002-05-09 6.9 MB
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apollo.1.1.5.zip 2002-05-09 6.3 MB
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Generic-Genome-Browser-1.41.tar.gz 2002-05-04 451.8 kB
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Bio-Graphics-1.05.tgz 2002-04-13 63.4 kB
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Generic-Genome-Browser-1.40.tar.gz 2002-04-13 419.4 kB
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Bio-Graphics-1.04.tar.gz 2002-04-12 63.3 kB
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Generic-Genome-Browser-1.39.tar.gz 2002-04-12 419.2 kB
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Bio-Graphics-1.03.tar.gz 2002-04-12 63.1 kB
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labdoc-2.0.tar.gz 2002-04-09 2.7 kB
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Generic-Genome-Browser-1.38.tar.gz 2002-04-09 419.6 kB
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apollo.1.1.3.zip 2002-04-02 5.9 MB
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apollo.1.1.3.tar.gz 2002-04-02 6.4 MB
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Generic-Genome-Browser-1.37.tar.gz 2002-04-01 384.0 kB
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Bio-Graphics-1.02.tar.gz 2002-03-31 62.7 kB
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Generic-Genome-Browser-1.36.tar.gz 2002-03-24 373.3 kB
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Bio-Graphics-1.01.tar.gz 2002-03-24 61.0 kB
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Bio-Graphics-1.00.tar.gz 2002-03-06 61.4 kB
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Generic-Genome-Browser-1.35.tar.gz 2002-03-06 314.1 kB
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org.bdgp.jdk1_1.noxml.tar.gz 2002-03-01 6.0 MB
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org.bdgp.jdk1_1.tar.gz 2002-03-01 6.8 MB
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org.bdgp.noxml.tar.gz 2002-03-01 6.1 MB
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Generic-Genome-Browser-1.34.tar.gz 2002-02-22 312.1 kB
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Bio-Graphics-0.98.tar.gz 2002-02-22 58.7 kB
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Generic-Genome-Browser-1.33.tar.gz 2002-02-19 311.1 kB
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Bio-Graphics-0.97.tar.gz 2002-02-19 59.0 kB
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Generic-Genome-Browser-1.32.tar.gz 2002-02-19 312.6 kB
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Generic-Genome-Browser-1.31.tar.gz 2002-01-24 308.8 kB
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Generic-Genome-Browser-1.02.tar.gz 2002-01-21 310.0 kB
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Bio-Graphics-0.96.tar.gz 2002-01-11 55.5 kB
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Generic-Genome-Browser-1.01.tar.gz 2002-01-11 308.7 kB
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elegans.gff.gz 2002-01-03 42.5 MB
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yeast.gff 2002-01-03 1.2 MB
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Generic-Genome-Browser-1.00.tar.gz 2002-01-03 306.7 kB
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Bio-Graphics-0.95.tar.gz 2002-01-03 55.3 kB
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example_conf_files.tar.gz 2001-12-19 4.0 kB
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Bio-Graphics-0.91.tar.gz 2001-11-19 63.1 kB
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Bio-Graphics-0.90.tar.gz 2001-11-19 62.4 kB
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Bio-Graphics-0.85.tar.gz 2001-10-01 29.5 kB
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Bio-Graphics-0.82.tar.gz 2001-07-20 29.0 kB
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Bio-Graphics-0.81.tar.gz 2001-06-12 28.1 kB
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Totals: 110 Items   1.2 GB 16 
This is an implementation of the 14 chromosomes of P.falciparum in the chado
schema (see chado.ddl in this directory for ddl used).

Please send any comments or problems to:

	David Emmert (FlyBase)
	emmert@morgan.harvard.edu

The data was taken from the following GenBank RefSeq records:

	NC_000521
	NC_000910
	NC_004314
	NC_004315
	NC_004316
	NC_004317
	NC_004318
	NC_004325
	NC_004326
	NC_004327
	NC_004328
	NC_004329
	NC_004330
	NC_004331

A few comments about this implementation:

1) Interbase locations were used.

1) To save time/pain in parsing, the "gene" and "mRNA" features in the GB
   records were ignored.  The "protein-coding gene" and "messenger RNA" 
   locations in chado_pf were extrapolated from the "CDS" locations.  As far
   as I could tell, the GB "gene" and "mRNA" locations always matched up
   with the "CDS" , but a consciencous load of the data would probably have
   a close look at the GB "mRNA" features to see if there are any UTRs before
   discounting them as I have done.

2) The same "/gene" value was used in several different CDS features in the
   GB annotations.  In order to have unique values, when i enountered these,
   I appended a number, "_n", to the gene symbol, to keep it unique.  When
   no "/gene" value was given, I named genes using the GB-acc#, eg, 
   "NC_004328_unknown_gene".

3) I didn't get the rRNAs or misc_RNAs in!
Source: gmod_readme, updated 2002-11-04