Download Latest Version gmatoV1.2Build20130106.zip (677.7 kB) Get Updates
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Name Modified Size InfoDownloads / Week
GMAToV1.2 2013-01-07
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GMATO_Citation.ris 2014-04-24 1.8 kB
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readme.txt 2013-01-07 3.3 kB
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copyright.txt 2012-12-24 1.0 kB
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helpEn.pdf 2012-12-24 907.2 kB
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About GMATo

GMATo
Genome-wide Microsatellite Analyzing Tool (GMATo) is a novel soft for faster and accurate microsatellite mining at any length and comprehensive statistical analysis for DNA sequences in any genome at any size, with easily customized parameters control for biologists and bio-informatician, running easily at common computers with Windows, Linux, MAC OS etc multiple platforms (platform independently) with both graphic and command interface programmed in Java and Perl computing language. 



Software GMATo is a one-step tool for Simple Sequence Repeats (SSR) or microsatellite, characterization in any genome and for facilitating SSR marker designing in genome scale. The program was easily analyzed all SSRs in 2G Zea mays genome.



Only one input file is required which contains DNA sequences in raw fasta format and output files in tabular format list all SSR loci information and statistical distribution at four biologist interested classifications. 



The program consists of three major functional modules: i) format sequence module, ii) SSR search and processing module and iii) statistic module. Each module can run independently or sub-sequentially. Module GMAT in Java or Perl integrates all above modules.detailed usage of GMATo is well documented in manual or help.PDF. The soft GMATo is freely available at http://sourceforge.net/projects/gmato/files/?source=navbar    or on contact.

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Download Page for free bioinformatics software: Genome-wide Microsatellite Analyzing Tool (GMATo) 


1. Packages which include the software,source code, manual, sample data.compatible for x32, x64 system.  
latest packages built are:  
	gmatoV1.2Built20130106.zip
    	gmatoV1.2Built20130106.tar.gz

     
updates in this packages: 
     
the manual of software GMATo was updated and more usage examples were added. 





2. Download GMATo:

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Package for Windows XP or above system: gmatoV1.2_201226OK_released.zip
unzip package using software 7zip or Winzip by double click package icon
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Package for Linux system: gmatoV1.2Built20130106.tar.gz

unzip the package to directory gmato or other directory name you want using following command:
tar -zxvf gmatoV1.2Built20130106.tar.gz gmato
before run, set *.pl, *.jar to excutable using command:

chmod a+x *.pl *.jar  
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Package for Mac OS X system: gmatoV1.2Built20130106.tar.gz

unzip the package by double click the downloaded package.
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3. run GMATo: 
   
manual help_xxxxxx.pdf in the package documented the detailed installation, running, functions and lots of examples of usage for the software GMATo.




4. Support


any inquiry and/or questions are welcome to be sent to Dr. Xuewen Wang via email xwwang@ymail.com
Source: readme.txt, updated 2013-01-07