Genome Microsatellite Analyzing Tool

The increasing sequence availability of more and more huge whole genomes (>1G) defeated currently existing SSR analyzing tools. Genome-wide Microsatellite Analyzing Tool (GMATo) is a novel powerful program for faster SSR mining at any length, any size,and comprehensive statistical analysis at genome aspect, especially designed for huge genome based on Perl scripts. Only one input file is required which contains DNA sequences in raw fasta format and output files in tabular format list all SSR loci information and statistical distribution at four biologist interested classifications. GMATo also has easy and graphical user interface scripted in Java and command line interface in Perl, either running in Windows, Linux and Mac etc. platforms with easily customized parameters control for biologists and bio-informatician. Software GMATo is a better tool for SSR characterization in a huge genome
cite this paper: Wang X. et al , Bioinformation [2013, 9(10):541-544]