Our software GENPPI is efficient because, for example, it creates interaction networks from the central genome of 50 species/lineages of Corynebacterium, with an average size of 2200 genes, in less than 40 minutes, on a conventional computer. Our software is compelling because the interaction networks that it creates reflect evolutionary relationships between species and obtained in Average Nucleotide Identity (ANI) analyzes. Also, It allows the user to define how he intends to explore the PP and CN characteristics through various parameters that let on the creation of customized interaction networks. For instance, one can set parameters regarding the genus, metagenome, or pangenome. In addition to the parameterization of GENPPI, it is also the user's choice what set of genomes he is going to study.
Please, to obtain the software and tutorials access: https://genppi.facom.ufu.br

Features

  • Standalone
  • No external dependecies
  • Fast
  • Open source
  • Command line
  • Linux
  • Windows
  • Macintosh
  • Steel Bank Common Lisp (SBCL)
  • Common Lisp
  • GEPHI
  • Cytoscape
  • R statistical software

Project Samples

Play Video Command-line Charting via web site reports Network opened via GEPHI Network opened via Cytoscape Protein similarity used to create the pangenome

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Common Lisp

Related Categories

Common Lisp Bio-Informatics Software

Registered

2022-01-13
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