Genome Profiler

Genome Profiler (GeP) is a program to perform whole-genome multilocus sequence typing (wgMLST) analysis for bacterial isolates.

Please note that this program is designed to run in Unix-like operating systems such as Mac OS X or Linux.

GeP uses conserved gene neighborhoods (CGN) to resolve gene paralogy. This approach allows the differentiation of orthologs from recently duplicated paralogs, which are often indistinguishable by pairwise sequence alignment.

For more details, please see our publication: http://jcm.asm.org/content/53/5/1765.abstract

Update 11th Sep. 2018:
This project will stop updating at Sourceforge. Please download the latest version from:
https://github.com/jizhang-nz

Update 4th Oct. 2017:
version: 2.1
bugs fixed.

Update 8th Sep 2015:
When using a multi-Fasta file of the the allele sequences (nt) as reference (switch -n), please use only CAPITAL letters A, T, G and C for the sequences. This bug will be fixed in the next version.

Project Activity

See All Activity >

Follow Genome Profiler

Genome Profiler Web Site

Other Useful Business Software

Find Hidden Risks in Windows Task Scheduler

Free diagnostic script reveals configuration issues, error patterns, and security risks. Instant HTML report.

Windows Task Scheduler might be hiding critical failures. Download the free JAMS diagnostic tool to uncover problems before they impact production—get a color-coded risk report with clear remediation steps in minutes.

Download Free Tool

Rate This Project

User Reviews

Be the first to post a review of Genome Profiler!

Additional Project Details

Registered

2014-09-08

Report inappropriate content