genomemap Files

Release notes for genomemap application version 1.2.0

Date: Nov 28, 2012

Project website: http://genomemap.sourceforge.net

Features:

1. Alignment Map. 
   1.1 Multiple maps can be added by editing the model .xml file. 
   1.2 Cross counts are reported in the output window.

2. Modify existing data set and create new data set. 
   2.1 When a job is run, the URL of the data set is given in the output window
   2.2 Use Favorites to add the folder/file. Edit the data set and run jobs using the drop-down data combo box.
   2.3 Create a copy of the data set in the Favorites window; restart application to see the data in the drop-down data combo box.

3. Likelihood using an estimator. Likelihood is computed for the data at the estimated model (from the same data).
   3.1 Choice of estimators in a drop-down combo box.

4. Simulated Annealing (SA) for both genetic (TAB08) and physical (KSA00) model.
   4.1 Turn on/off the log
   4.2 Cross-counts (between start & best orders) in the output window.