Home / Extension packages (for English version)
Name Modified Size Downloads / Week Status
Parent folder
Totals: 6 Items   46.8 MB 6
imvid_english.zip 2014-12-03 16.3 MB 11 weekly downloads
peptides_english.zip 2014-12-03 2.6 MB 11 weekly downloads
tracking_english.zip 2014-12-03 1.4 MB 11 weekly downloads
zebrafishmin_english.zip 2014-12-03 19.0 MB 11 weekly downloads
asphalt_english.zip 2014-12-03 7.5 MB 11 weekly downloads
readme_extension_packages.txt 2014-05-07 2.3 kB 11 weekly downloads
Extension Packages: * ZebrafishMiner (tissue detection and fluorescence quantification for zebrafish larvae) zebrafishmin_*.zip Algorithms described in: GEHRIG, J.; REISCHL, M.; KALMAR, E.; FERG, M.; HADZHIEV, Y.; ZAUCKER, A.; SONG, C.; SCHINDLER, S.; LIEBEL, U.; MÜLLER, F.: Automated High Throughput Mapping of Promoter- Enhancer Interactions in Zebrafish Embryos. Nature Methods 6 (2009) 12, S. 911–91 * Tracking - preliminary version (tracking of 3D objects) tracking_*.zip Algorithms described in: J. Stegmaier, R. Alshut, M. Reischl, and R. Mikut. Information fusion of image analysis, video object tracking, and data mining of biological images using the open source matlab toolbox gait-cad. Biomedizinische Technik (Biomedical Engineering), 57 (S1):458–461, 2012 * Images and Videos - preliminary version (image and video processing incl. feature extraction ) imvid_*.zip Algorithms described in: J. Stegmaier, R. Alshut, M. Reischl, and R. Mikut. Information fusion of image analysis, video object tracking, and data mining of biological images using the open source matlab toolbox gait-cad. Biomedizinische Technik (Biomedical Engineering), 57 (S1):458–461, 2012 * Peptides (feature extraction and peptide optimization based on amino-acid ditsributions and chemical descriptors) peptides_*.zip Algorithms described in: MIKUT, R.: Computer-based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities. Methods in Molecular Biology 618 (2010), S. 287–299. * Asphalt (image processing and feature extraction for segmentation of grains in asphalt samples, ''Images and Videos'' must be installed) asphalt_*.zip Algorithms described in: REISCHL, M.; WITTENBERG, A.; KARCHER, C.; MIKUT, R.: Asphalt Image Miner: Ein Werkzeug zur automatischen Quantifizierung der Gesteinskörnungen in Asphaltproben. at - Automatisierungstechnik (2014), submitted paper (in German only, English paper in preparation). Installation: Each zipped toolbox has to be extracted in the directory application_specials of the Gait-CAD directory. The subdirectory structure must be preserved, leading to a new subdirectory zebrafishmin resp. tracking etc.
Source: readme_extension_packages.txt, updated 2014-05-07

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