Download Latest Version fun4me-v2.tar.gz (2.6 GB)
Email in envelope

Get an email when there's a new version of Fun4Me

Home / Fun4me-V2 / data
Name Modified Size InfoDownloads / Week
Parent folder
uniref90-go-noE.fasta 2020-12-23 2.2 GB
0
gene_association.goa_ref_uniprot.go.noE 2020-12-23 436.4 MB
0
enzyme.info 2020-12-23 18.7 kB
0
ec2path 2020-12-23 125.0 kB
0
ec2go 2020-12-23 387.1 kB
0
pathway.info 2020-12-23 177.9 kB
0
Totals: 6 Items   2.6 GB 0 
Package Name: Fun4Me (Functional Annotation for Metagenomics)

Developers: Yuzhen Ye <yye@indiana.edu> and Fatemeh Sharifi <fsharifi@umail.iu.edu>
Affiliation: School of Informatics and Computing, Indiana University, Bloomington

The development of Fun4Me was supported by NIH grant 1R01HG004908 &  NSF grant DBI-0845685.

Fun4Me is free software under the terms of the GNU General Public License as published by
the Free Software Foundation.

Introduction
==================

Structure of this package
==================
install -- a bash script for installation
data -- a folder for important data
tools -- a place where the tools (FragGeneScan, RAPSearch & MinPath) go
tests -- a folder where you can find a small metagenomic dataset for testing
fun4me.py -- the wrapper script for one-stop application of this package

Installation
==================
./install

Preprocessing similarity search database
==================
cd data
../tools/RAPSearch2.24_64bits/bin/prerapsearch -d uniref90-go-noE.fasta -n uniref90-go-noE.rap

(This is a slow process; please be patient. This preprocessing step only needs to be done once)

Testing the programs
==================
cd tests
../fun4me.py -i SRS011061-reads-small.fa -o SRS011061-reads-small

Running the programs
==================
./fun4me.py
Source: README, updated 2020-12-23