Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for PCR assays. Here we propose new software that allows the user to work with several sequences for PCR primer design in one step.

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Bio-Informatics

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Additional Project Details

Operating Systems

Linux, BSD

Intended Audience

Advanced End Users, End Users/Desktop

User Interface

Console/Terminal, Command-line

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2014-01-13