FragGeneScan Icon

FragGeneScan

Add a Review
29 Downloads (This Week)
Last Update:
Download FragGeneScan1.30.tar.gz
Browse All Files

Description

Note to the users: the new release (v1.30) is significantly improved in terms of performance. For large files of assembly contigs, the running time could be reduced from days to a few mins. (Read more about this in the "releases" file included in the package).

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.

If you use FragGeneScan, please cite:
Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747

TransGeneScan is a sister program for gene finding in metatranscriptomic sequences (https://sourceforge.net/projects/transgenescan/).

FragGeneScan Web Site

Categories

Bio-Informatics

KEEP ME UPDATED

Write a Review

User Reviews

Be the first to post a review of FragGeneScan!

Additional Project Details

Intended Audience

Information Technology, Healthcare Industry

User Interface

Console/Terminal

Programming Language

Perl, C

Registered

2013-10-22

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

Sign up for the SourceForge newsletter:

No, thanks
Screenshots can attract more users to your project.
Features can attract more users to your project.