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Flexbar

flexible barcode and adapter removal for sequencing platforms

5.0 Stars (9)
19 Downloads (This Week)
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Description

Flexbar moved to https://github.com/seqan/flexbar

The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform.

Reference:
Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for next-generation sequencing platforms. Biology 2012, 1(3):895-905.

Flexbar Web Site

Features

  • Demultiplexing of barcoded sequencing runs
  • Detection and removal of adapter sequences
  • Paired reads and separate barcode reads
  • Sequence analysis based on SeqAn library

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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C++

Registered

2010-09-23

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