FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs.

The program comes in 2 different releases
* GUI version (FishingCNV_X.X.X.zip)
* Command line version (FishingCNV_X.X_pipeline)

Browse through our files to find the different releases.

Features

  • Graphical User Interface
  • CNV analysis for matched test/control (e.g. cancer/tumor)
  • CNV analysis for non-matched samples
  • Batch-effect removal within the control set
  • Tab-delimited output can be viewed in Excel
  • Additional output file can be visualized in IGV
  • Distribution plots and outlier plots for each chromosome

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

Follow FishingCNV

FishingCNV Web Site

Other Useful Business Software

Communicate & Connect with Ring Central's VoIP Solution Communicate & Connect with Ring Central's VoIP Solution Icon
Communicate & Connect with Ring Central's VoIP Solution Icon

Cloud Powered Business Phone System

  • Unrivaled value & reliability in one solution
  • Unlimited Calls/SMS/Conferencing/Fax
  • Trusted by 350,000+ Businesses

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of FishingCNV!

Additional Project Details

Intended Audience

Science/Research, Education

User Interface

Java Swing

Programming Language

Java, S/R

Registered

2012-10-11