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Name Modified Size InfoDownloads / Week
FineSplice 0.2.2 2014-04-01
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FineSplice 0.2.1 2014-03-31
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FineSplice 0.1 2014-02-26
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FineSplice 0.2 2014-02-26
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FineSplice-0.2.2.tar.gz 2014-04-01 6.4 kB
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FineSplice-0.2.1.tar.gz 2014-03-31 6.3 kB
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FineSplice-0.2.tar.gz 2014-02-26 6.0 kB
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README 2014-02-26 740 Bytes
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example.bam 2013-11-05 137.9 MB
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Totals: 9 Items   137.9 MB 2 

Install Python 2.x (>= 2.6) and the following modules:

    http://code.google.com/p/pysam/     (pysam)
    http://scikit-learn.org/            (scikit-learn)


Run FineSplice with the example file or a valid TopHat2 alignment:

    python FineSplice.py -i example.bam \       #TopHat2 BAM file
                         -l 50                  #read length


See FineSplice README for detailed usage.

For any comments or questions you may contact us at: agatto AT cnic DOT es

If you use FineSplice in scientific publications, please cite our paper:

    Gatto,A. et al (2014) FineSplice, enhanced splice junction 
    detection and quantification: a novel pipeline based on the 
    assessment of diverse RNA-Seq alignment solutions.
Source: README, updated 2014-02-26