filterSAMbyVCF is a Pascal command line program to separate allele-specific reads from a SAM file.
This program extracts reads from SAM file according to SNPs from VCF file.
Extracted reads have ALT allele at the position given in VCF file.
Usage with UNIX/Linux/MacOS: ./filterSAMbyVCF vcfFile.vcf samFile.sam
Usage with Windows: filterSAMbyVCF.exe vcfFile.vcf samFile.sam
No warranty of any kind is provided. Use at your own risk.
Follow filterSAMbyVCF
You Might Also Like
Whether natural disaster, cyberattack, or plain-old human error, data can disappear in the blink of an eye. ConnectWise BCDR (formerly Recover) delivers reliable and secure backup and disaster recovery backed by powerful automation and a 24/7 NOC to get your clients back to work in minutes, not days.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of filterSAMbyVCF!