Download Latest Version FamSeq1.0.2.tar.gz (643.9 kB)
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Name Modified Size InfoDownloads / Week
FamSeq1.0.2.tar.gz 2014-09-11 643.9 kB
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FamSeq_Manual.pdf 2014-07-26 199.8 kB
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readme 2014-07-26 1.1 kB
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FamSeq1.0.1.tar.gz 2014-04-23 640.8 kB
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FamSeqv1.0.0-1.tar.gz 2013-03-20 700.1 kB
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Totals: 5 Items   2.2 MB 0 
Test data is provided in the package. You can type the following commands in the command line to run FamSeq:

1. extract files from the compressed file:
tar xvf FamSeq1.0.2.tar.gz

2. go to source file directory and compile the source file
cd FamSeq/src/
#CPU version
make

#GPU version If you have CUDA-enabled GPUs in your computer.
make -f makefile.gpu

# if you use MacOS 10.8 with XCode 5, or an error like "unsupported option '-dumpspecs'" occurs when compiling, use the following command to compile
make -f makefile.gpu.clang

3. run the test data
##CPU version
#VCF file
./FamSeq vcf -vcfFile ../TestData/test.vcf -pedFile ../TestData/fam01.ped -output test.FamSeq.vcf -v

#likelihood only format
./FamSeq LK -lkFile ../TestData/loftest.txt -pedFile ../TestData/fam01.ped -output test.FamSeq.txt

##GPU version
#VCF file
./FamSeqCuda vcf -vcfFile ../TestData/test.vcf -pedFile ../TestData/fam01.ped -output test.FamSeq.vcf -v

#likelihood only format
./FamSeqCuda LK -lkFile ../TestData/loftest.txt -pedFile ../TestData/fam01.ped -output test.FamSeq.txt
Source: readme, updated 2014-07-26