| Name | Modified | Size | Downloads / Week |
|---|---|---|---|
| readme.txt | 2012-07-18 | 1.1 kB | |
| F2C2 v0.95b.zip | 2012-07-18 | 608.9 kB | |
| F2C2 v0.9b.zip | 2012-05-25 | 230.4 kB | |
| F2C2-v0.7b.tar.gz | 2011-11-04 | 217.9 kB | |
| Totals: 4 Items | 1.1 MB | 3 |
F2C2 version 0.95b
Performs Flux Coupling Analysis based on the F2C2 algorithm.
Accompanying tool for: dx.doi.org/10.1186/1471-2105-13-57
USAGE:
1. [fctable, blocked] = F2C2(solver, network [, tol])
Compute the flux coupling for every pair of reactions in the network.
PARAMETERS:
a. solver: LP solver to us - possible values: 'linprog', 'clp', 'lindo', 'glpk'
b. network: metabolic network structure with fileds
- stoichiometricMatrix
- reversibilityVector
- Reactions
- Metabolites
c. tol: tolerance level (default value is 10e-6)
OUTPUT:
a. fctable: the resulting flucx coupling table
Interpretation for element (i, j):
0 - uncoupled
1 - fully coupled
2 - partially coupled
3 - reaction i is directionally coupled to j
4 - reaction j is directionally coupled to i
b. blocked: a 0/1 vector with a 1 corresponding to a blocked
reaction.