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EXCAVATOR-tool

beta

Tool for detecting CNVs from whole-exome sequencing data

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Description

ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!
We recently published on BMC Genomics a novel software package, named XCAVATOR, for the identification of CNVs/CNAs from short and long reads whole-genome sequencing experiments (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0).
XCAVATOR is freely available at http://sourceforge.net/projects/xcavator/.


EXCAVATOR is a novel software package for the detection of copy number variants (CNVs) from whole-exome sequencing data.
EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract).


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ATTENTION!!!!! In order to use properly the EXCAVATOR tool, users must download the uniqueome mappability files at the following link:

http://grimmond.imb.uq.edu.au/uniqueome/downloads/hg19_uniqueome.coverage.base-space.25.1.Wig.gz (for hg19)
http://grimmond.imb.uq.edu.au/uniqueome/downloads/hg18_uniqueome.coverage.base-space.25.1.Wig.gz

EXCAVATOR-tool Web Site

Categories

Bio-Informatics

Features

  • Next Generation Sequencing
  • Copy Number Variants
  • Whole Exome Sequencing

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Additional Project Details

Programming Language

Perl

Registered

2012-08-02

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