episerve

R-based server for infectious disease epidemiology

Brought to you by: caitiecollins, jombart

Downloads: 0 This Week

Last Update: 2016-10-20

Browse Code

Get an email when there's a new version of episerve

episerve is an R package providing functionalities for handling, visualizing and analyzing epidemics data through a R interface.

Features

Visualization of data: timelines, contact networks, maps, phylogenetic trees
Computation of incidence
Estimation of reproduction numbers
Interfaced with Epicollect for data collection from mobile devices

Project Samples

basic data summaries

Timeline of collected samples

Deriving incidence curves

Estimation of reproduction numbers

Visualisation of dynamic contact networks

Project Activity

See All Activity >

Follow episerve

episerve Web Site

Other Useful Business Software

Our Free Plans just got better! | Auth0 Icon

Our Free Plans just got better! | Auth0

With up to 25k MAUs and unlimited Okta connections, our Free Plan lets you focus on what you do best—building great apps.

You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.

Try free now

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of episerve!

Additional Project Details

Registered

2013-09-16

Report inappropriate content

Recommended Projects

GeneMiner
GeneMiner2 is based on our previously developed GeneMiner and Easy353 software and integrates excellent tools such as Blast, Minimap2, Fasttree, Muscle5, Mafft, Astral, PPD, PGA, NOVOPlasty, and OrthoFinder. Please cite the literature prompted by the software when using the corresponding functionalities. Our GeneMiner2 manuscript is currently under review: Yu XY, Tang ZZ, Zhang Z, Song YX, He H, Shi Y, Hou JQ, Yu Y. GeneMiner2: Accurate and automated recovery of genes from genome-skimming data. Manuscript submitted, 2025. Until that paper is formally published, please cite our earlier work instead: Zhang Z, Xie PL, Guo YL, Zhou WB, Liu EY, Yu Y. 2022. Easy353: A tool to get Angiosperms353 genes for phylogenomic research. Molecular Biology and Evolution 39(12): msac261. Xie PL, Guo YL, Teng Y, Zhou WB, Yu Y. 2024. GeneMiner: A tool for extracting phylogenetic markers from next-generation sequencing data. Molecular Ecology Resources e139.
Audiometry
A Model-View-ViewModel Application for Hearing Loss Diagnosis
DataMelt
Computation and Visualization environment
JTemporal temporal framework for Java
JTemporal is a framework of components providing functionalities for time related applications. Provides basic functionalities handling the most common temporal aspects (for example instant, period, temporal association).
ImIRC
ImIRC it's a Client for IRC server written in C# Sharp using native soket, streaming, dcc and scripting engine.