Download Latest Version EDDA_1.4.0.tar.gz (1.9 MB) Get Updates
Home
Name Modified Size InfoDownloads / Week
EDDA_1.4.0.tar.gz 2015-12-24 1.9 MB
0
EDDA_1.5.3.tar.gz 2015-01-14 1.9 MB
0
EDDA_1.5.2.tar.gz 2015-01-13 1.9 MB
0
EDDA_1.5.1.tar.gz 2015-01-08 1.9 MB
0
EDDA_1.5.0.tar.gz 2015-01-06 1.9 MB
0
readme 2014-09-08 863 Bytes
0
EDDA_1.1.0.zip 2014-09-08 4.7 MB
0
EDDA_1.1.0.tar.gz 2014-09-08 1.9 MB
0
EDDA.pdf 2014-02-27 67.9 kB
0
EDDA-manual.pdf 2014-02-27 114.1 kB
0
EDDA_0.99.9.zip 2014-02-27 2.4 MB
0
EDDA_0.99.9.tar.gz 2014-02-27 1.9 MB
0
EDDA_0.99.0.tgz 2014-02-14 1.9 MB
0
EDDA_0.99.0.zip 2014-02-14 2.4 MB
0
EDDA_0.99.0.tar.gz 2014-02-14 1.9 MB
0
Totals: 15 Items   26.7 MB 0 
########### Install EDDA package (in Windows, Macintosh, Linux)########### 

In Linux command line:
R CMD INSTALL EDDA_x.y.z.tar.gz

In Windows: Packages --> Install Package(s) from local zip files....
EDDA_x.y.z.zip

In Mac OS X command line:
R CMD INSTALL EDDA_x.y.z.tgz

########### Depend packages ########### 

Rcpp (>= 0.10.4),parallel,snow,ROCR,DESeq,baySeq,edgeR

install.packages("Rcpp")
install.packages("parallel")
install.packages("snow")
install.packages("ROCR")
source("http://bioconductor.org/biocLite.R")
biocLite("DESeq")
biocLite("baySeq")
biocLite("edgeR")


########### Test code ########### 

library("EDDA");
data <- generateData(SimulModel="Full",EntityCount=500);
test.obj <- testDATs(data,DE.methods=c("DESeq"),nor.methods="default");
auc.obj  <- computeAUC(test.obj);
plotROC(auc.obj);
plotPRC(auc.obj);
Source: readme, updated 2014-09-08