Diversity Maps

Diversity Maps is a data visualization tool for plant geneticists and breeders. It generates publication-quality, vector-based chromosome maps displaying differences in marker states between individuals.

Features

Displays haplotype similarity by color;
Sorts accessions automatically to simplify visual inspection;
Generates distance-scaled, vector maps in Postscript format;
'Passport' mode provides whole genome overviews per-accession;
You can fully customize view and modify any colors!

Project Samples

Spectral map: all-vs-all comparison (large SNP panel)

Diversity map: 35 accessions, compared with 2 references

Spectral maps of 2 varieties (part of diverse accession set)

Project Activity

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

Linux, Windows

Intended Audience

Agriculture, Science/Research

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2011-03-12

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