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de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.
Features
- MPI 2.2
- ISO/IEC C++ 2003
- de Bruijn
- paralleled
- Illumina data
Follow Ray: scalable assembly
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User Reviews
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Very nice assembler, great improvement in the memory consumption in 1.3.0 compared to 1.0.0!