Download Latest Version db-derby-10.10.1.1.zip (6.2 MB)
Email in envelope

Get an email when there's a new version of Taverna Tutorial (DDMoRe)

Home
Name Modified Size InfoDownloads / Week
README.txt 2014-01-02 3.5 kB
0
TELLite.zip 2014-01-02 586 Bytes
0
Taverna Workbench 2.4.0.zip 2014-01-02 188.6 MB
0
R-3.0.1.zip 2014-01-02 67.3 MB
0
Octave-3.6.2.zip 2014-01-02 39.7 MB
0
db-derby-10.10.1.1.zip 2014-01-02 6.2 MB
0
apache-tomcat-7.0.42.zip 2014-01-02 17.2 MB
0
Tutorial.zip 2014-01-02 3.5 MB
0
Totals: 8 Items   322.5 MB 0 
				[Taverna Tutorial (DDMoRe)]

DESCRIPTION
============

Taverna (http://www.taverna.org.uk/) is a workflow engine.
Taverna is designed to run data analysis pipe-lines 
where processes are defined in workflow files authored via 
a graphical user interface.

Taverna offers many powerful scientific tools 
for visualisation and information management.
The Taverna front-end however can be daunting to a new user.

The purpose of this tutorial is to provide pharmokinetic modellers 
examples on how Taverna can be used to run simulation software 
on a remote server, using models/parameters obtained 
from a repository and manage the generated output files and graphs.

The tutorial contents is structured to mirror the functionality of 
the DDMoRe application servers (http://www.ddmore.eu/).
At the time of writing (November 2013), the DDMoRe run-time environment 
was under development so the  DDMoRe application servers were not available 
for this tutorial release. The DDMoRe application servers are replaced 
with open source software, which run on a local 'Windows' work-station.

The server software supplied with this tutorial however only offers 
a fraction of the capabilities of the DDMoRe application servers 
and will be replaced with the DDMoRe run-time software as 
those components are released in 2014/15.

At the moment, this tutorial runs Windows 7/8 work-stations only.

REQUIREMENTS
============

Windows 7
Java Standard Edition >=1.6

SOFTWARE
============

Software bundles are supplied with this tutorial.
All of the below software is open source and supplied without any warranty.
For more information on software licensing, please consult the source web-sites.

+------------------------+-----------------------------------+
|BUNDLE NAME             |SOURCE WEB SITE                    |
+------------------------+-----------------------------------+
|Tomcat 7.0              |http://tomcat.apache.org/          |
|Derby Database          |http://db.apache.org/derby/        |
|Octave 3.6.2            |http://www.gnu.org/software/octave |
|R 3.0.1                 |http://www.r-project.org/          |
|Taverna Workbench 2.4.0 |http://www.taverna.org.uk/         |
+------------------------+-----------------------------------+

INSTALLATION
============

Download the following files from this web-site:-

apache-tomcat-7.0.42.zip
db-derby-10.10.1.1.zip
Octave-3.6.2.zip
R-3.0.1.zip
Taverna Workbench 2.4.0.zip
TELLite.zip
Tutorial.zip

N/B To keep the software installation simple, 
    all of the software paths are pre-configured.
    If you change the installation paths, the tutorial software will not work.

1. Download all of the above ZIP files from this web-site.
2. Unzip the contents of 'Tutorial.zip' under 'C\:' so 
   that archive root directory is 'C:\Tutorial'.
3. Check that the sub-directories (i.e. bin, data, dist, data, docs, examples, simulation_output) 
   are visible under 'C:\Tutorial'.
4. Change directory to 'C:\Tutorial\dist' 
   and unpack the remaining ZIP files in this directory.
   The tutorial directory should now contain the following sub-folders:-

C:\Tutorial\dist\apache-tomcat-7.0.42
C:\Tutorial\dist\db-derby-10.10.1.1
C:\Tutorial\dist\Octave-3.6.2
C:\Tutorial\dist\R-3.0.1
C:\Tutorial\dist\Taverna Workbench 2.4.0
C:\Tutorial\dist\TELLite

5. Change directory to 'docs' and open the file 'index.htm'.
   Follow the instructions to start the tutorial proper.
Source: README.txt, updated 2014-01-02