Tools are available to analysis the codon usage, but there are no tools available focusing on analyzing the codon usage co-adaptation between viruses and their hosts. Therefore, Codon Usage Co-Adaptation Analysis Tool "CUCAA Tool" were developed by python 3.7. The tool can calculate various codon usage bias measurements as effective number of codons, codon adaptation index, relative codon deoptimization index, similarity index, as well as a simple cluster machine learning approach to see if the viruses will be clustered with the host codon usage or not.
Features
- Codon Usage Bias analysis
- Co-evolution
- Translation selection
- Mean Shift clustering
- Viruses
Project Samples
License
MIT LicenseFollow CUCAA tool
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