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cruxcat

beta

analysis tool enables user to run differential expression on clusters

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Description

Lightweight standalone software tool to enable molecular biologists, without bioinformatics support, to ask biological questions regarding to their CAGE data which can address the most relevant analysis questions.
cruXcat is focused on enabling data exploration of CAGE datasets on multiple computer platforms. The software imports expression tables and allows users to annotate CAGE clusters and discover differentially regulated clusters between user selected samples.
The nature of the work flow also allows for expression detection on tags clusters creating p-value, an estimate of how often we would observe the data, utilizing edgeR methodology with differential expression analysis of digital expression data.
(applies edgeR methods, therefore rJava Interface and proper R setup required)
Utilizing the Java platforms flexibility this standalone software will be compatible with multiple computer platforms such as Linux/Unix and Mac OS X. The software package comes with a detaile

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Additional Project Details

Languages

English, Japanese

Intended Audience

Information Technology, Healthcare Industry, Science/Research, End Users/Desktop

User Interface

Java Swing

Programming Language

Java

Registered

2012-10-24

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