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COV2HTML

A visualization and analysis tool of Bacterial NGS data for Biologists

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Description

COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies.

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Features

  • RNA-Seq strand coverage visualization : Black (strand +), Purple (strand -)
  • ncRNA feature analysis
  • X and Y Zooms are supported
  • Security enhanced: HTTPS as default

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Additional Project Details

Intended Audience

Science/Research

User Interface

Project is a user interface (UI) system, Tk

Programming Language

Python, PHP

Registered

2012-04-24

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